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Yale Microarray Database
(YMD)
Janet Hager, Ph.D.
300 George Street
Room 2115
New Haven CT, 06511
Kei-Hoi Cheung, Ph.D.
333 Cedar Street
PO Box 208009
New Haven, CT 06520
Contact Us
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YMD
> Publications
> Publications
of Interest
2003
- Bertucci, F., Viens, P., Hingamp, P.,
Nasser, V., Houlgatie, R., Birnbaum, D. (2003) Breast Cancer Revisited using
DNA Array-Based Gene Expression Profiling. Int. J. Cancer: 103,
565-571.
- Schmidt, U., Begley, C.G. (2003) Medicine
in focus: Cancer diagnosis and microarrays. Int J Biochem Cell Biol 35,
119-124
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Sanchez-Carbayo
M. (2003) Use of high-throughput DNA microarrays to identify biomarkers for
bladder cancer. Clin Chem: 49(1), 23-31
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Zbynek Bozdech, Jingchun Zhu, Marcin P
Joachimiak, Fred E Cohen,
Brian Pulliam and Joseph L DeRisi. (2003)
Expression profiling of the schizont and trophozoite stages of Plasmodium
falciparum with a long-oligonucleotide microarray. Genome Biology 2003,
Volume 4, Issue 2, Article R9.
2002
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Lacroix, M., Zammatteo, N.,
Remade, J., Leclercq, G. (2002) A low-density DNA microarray for analysis of
markers in breast cancer. Int J Biol Markers: 17(1), 5-23
- Gruvberger, S.K.,
Ringner, M., Eden, P., Borg, A., Ferno, M., Peterson, C., Meltzer, P.S. (2002)
Expression profiling to predict outcome in breast cancer: the influence of
sample selection. Breast Cancer Res: 5(1), 23-26
2001
- Halgren, Robert
G., Fielden, Mark R., Fong, Cora J., and Zacharewski, Timothy R. (2001)
Assessment of clone identity and sequence fidelity for 1189 IMAGE cDNA clones.
Nucleic Acids Research, 2001, Vol. 29, No. 2, 582-588.
- Pradet-Bladade,
Berengere; Boulme, Florence; Beug, Hartmut; Mullnur, Ernst W.; and Garcia-Sanz,
Jose A. (2001) Translation control: bridging the gap between genomics and
proteomics? TRENDS in Biochemical Sciences, Vol. 26, No. 4, 225-229.
- Kellam, Paul (2001)
Microarray gene expression database; progress towards an international
repository of gene expression data.
Genome Biology 2001, 2(5):reports4011.1-4011.3.
- Stuart, Robert O.,
Bush, Kevin T., and Nigam, Sanjay K. (2001) Changes in global gene expression
patterns during development and maturation of the rat kidney. Proc. Natl.
Acad. Sci. USA, Vol. 98, Issue 10, 5649-5654, May 8, 2001.
- Tseng, George C., Oh,
Min-Kyu, Rohlin, Lars, Liao, James C., and Wong, Wing Hung. (2001) Issues in
cDNA microarray analysis: quality filtering, channel normalization, models of
variations and assessment of gene effects. Nucleic Acids Research, Vol. 29,
No. 12, 2549-2557.
- Ken-ichi Yoshida, Kazuo
Kobayashi, Yasuhiko Miwa, Choong-Min Kang, Masayuki Matsunaga, Hirotake
Yamaguchi, Shigeo Tojo, Mami Yamamoto, Ryoko Nishi, Maotake Ogasawara, Tatsuo
Nakayama and Yasutaro Fujita. (2001) Combined transcriptome and protemo
analysis as a powerful approach to study genes under glucose respression in
Bacillus subtilis. Nucleic Acids Research, Vol. 29, No. 3, 683-692.
2000
- Arfin, S., Long,
A., Ito, E., Tolleri, L., Riehle, M.Paegle, E., and Hatfield, G. Global gene
expression profiling in Escherichia coli K12: the effects of integration host
factor (2000). J. Biol. Chem., 275, 29672-29684.
- Grills, G., Griffin, C.,
Lilley, K., Massimi, A., Bao, Y., and VanEe, J. (2000) The state of the art of
microarray analysis: a profile of microarray laboratories.
1999/2000 ABRF Microarray Research Group Study.
- Hughes, T.R., Marton,
M..J., Jones, A.R., Roberts, C.J., Stoughton ,R,. Armour, C.D., Bennett, H.A.,
Coffey, E., Dai, H., He,Y.D., Kidd, M.J., King, A.M., Meyer, M.R, Slade, D.,
Lum, P.Y., Stepaniants, S.B., Shoemaker, D.D., Gachotte, D., Chakraburtty, K.,
Simon, J., Bard, M., Friend, S.H. Functional discovery via a compendium of
expression profiles. (2000) Cell, 102,109-26.
- Kane, Michael D.,
Jatkoe, Timothy A., Stumpf, Craig R., Lu, Jia, Thomas, Jeffrey D., Madore,
Thomas and Steven J. (2000) Assessment of the sensitivity and specificity of
oligonucleotide (50mer) microarrays, 2000, Vol. 28, No. 22, 4452-4457.
- Lee, M-L, Kuo, F.C.,
Whitmore, G.A., and Sklar, J. (2000) Importance of replication in microarray
gene expression studies: statistical methods and evidence from repetitive cDNA
hybridizations.
Proc. Natl.
Acad. Sci. 97, 9834-9839.
- Lemkin, Peter
F., Thornwall, Gregory C., Walton, Katherine D., Hennighausen, Lothar (2000)
The Microarray Explorer tool for data mining of cDNA microarrays: application
for the mammary gland. Nucleic Acids Research, 2000, Vol. 28, No. 22,
4452-4459.
- Tanaka, T.S., Jaradat, S.A.,
Lim, M.K., Kargul, G.J., Wang, X., Grahovac, M.J., Pantano, S., Sano, Y., Piao,
Y., Nagaraja, R., Doi, H., Wood, W.H., Becker, K.G., and Ko, M.S. (2000)
Genome-wide expression profiling of mid-gestation placenta and embryo using a
15,000 mouse developmental cDNA microarray.
Proc. Natl.
Acad. Sci. 97, 9127-9132.
- Young, R.A. (2000)
Biomedical discovery with DNA arrays. Cell 102, 9-15.
1998
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